Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015815183.1_cds_XP_016498208.1_12262
CDS Infomation

[gene=LOC107816971] [db_xref=GeneID:107816971] [protein=putative E3 ubiquitin-protein ligase RING1a] [protein_id=XP_016498208.1] [location=join(15197..15456,15946..16031,16105..16346,16463..16512,16596..16670,16787..17285)] [gbkey=CDS]
Sequence

ATGGTGAACGAAGATTCAATCAAGAGTCCCCTTAACACAAAAAGCAACCCTACTAAACAA
CCTGAAGAACCCAAAAATGGAGAAAGAGTTGATTCTTTGTTCAGCCCAAATTTCAGATCA
GTGGCTGCTATGGCTGGTTGGGACGAAGAAGCTCTTCTTATTGCCAGTCTTGTTGTTGAA
GACACTCCCGATCGCCTTCCTAAACAAAAGAAACGTTCCGATTTGCTGCATTTCAAGACT
CCCCCAACAAATTCCAGAAGGAAAAGAAGGGTTCAGAAGAGGAGCCCTGAGTCCATACCT
GTGACTGTTCTTAATCTGGATGAAGAGGATGACACTGCAAAACAAGAAAGCGAGAAAAAG
GAGGCAGAATCAAAATCCATTGAGAATTTAGACAAGAAACGAGCTGAGGCATCAGAAGAA
CCGAGATGTTCTGCTTCATCTTCTGATAAGAACATAGAATCAAAATCTATTCAGAAAGCA
GAGAAGAAAGGAGCTGCAGGATTGCAAGAACAAGGATGTTCTGTTTCAGCCTCTTCTTCA
TCGGCATTTCCATGCATTGATCGACTTCGTGAAGAGCTTTCTTGCGCTATTTGTTTGGAG
ATATGTTTTGAACCTAGTACCACTCCTTGTGGTCACAGTTTTTGCAAGAAGTGTCTGAGA
TCTGCTGCTGATAAATGTGGAAAGAAATGTCCCAAGTGCAGGCAGCTTATAAGCAATGGA
AGATCTTGCACTGTAAACACAGTACTTTGGAATACAATTCAACTTCTGTTTCCTAAAGAA
ATAGAAGCAAGAAAAGCAGCTGGAGCTTTGAATAGTAGAGAAGCTCGACGCAAAAGTCCA
GTAAGAGCTGCTACAGCTCATTCTAACATCTCTAGCAGCAGAATATCAAGAGTGTTCGCG
CTTAACAGTCCAGAATCTGGTCCTAGTAGTCAAGAAAGAAGGAATTCTCGCTCCATGAGA
AGACAAAGTGTCCGAGCTGCTGTAATGCCAAGCAGAAACAGAGACATTAATTCGAGGAGG
GAGTTACCAAGCCAAGACGAGGATGCTGCATTGGCACTGAGAATGCAGAGAGAGGAGTTC
ATGGAATCCTTTAGGACTAGGAGTTCTGCTGATGAGCAGTACAGGAGCTCGCTCGCTTTA
GCCAGAGCAAATTTGAGGGCCATGGCGTCAAGAGCCATTAACATTCGTGTTAGAGGAGGC
CGTGGAACATAA

Peptide Sequence

PEP ID

XP_016498208.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Nicotiana tabacum]
Sequence

MVNEDSIKSPLNTKSNPTKQPEEPKNGERVDSLFSPNFRSVAAMAGWDEEALLIASLVVE
DTPDRLPKQKKRSDLLHFKTPPTNSRRKRRVQKRSPESIPVTVLNLDEEDDTAKQESEKK
EAESKSIENLDKKRAEASEEPRCSASSSDKNIESKSIQKAEKKGAAGLQEQGCSVSASSS
SAFPCIDRLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISNG
RSCTVNTVLWNTIQLLFPKEIEARKAAGALNSREARRKSPVRAATAHSNISSSRISRVFA
LNSPESGPSSQERRNSRSMRRQSVRAAVMPSRNRDINSRRELPSQDEDAALALRMQREEF
MESFRTRSSADEQYRSSLALARANLRAMASRAINIRVRGGRGT

Transcript Sequence

Gene sequence data has not been registered.